File: //lib/python3/dist-packages/networkx/algorithms/tests/test_distance_measures.py
from random import Random
import pytest
import networkx as nx
from networkx import convert_node_labels_to_integers as cnlti
from networkx.algorithms.distance_measures import _extrema_bounding
@pytest.mark.parametrize(
"compute", ("diameter", "radius", "periphery", "center", "eccentricities")
)
def test_extrema_bounding_deprecated(compute):
G = nx.complete_graph(3)
with pytest.deprecated_call():
nx.extrema_bounding(G, compute=compute)
def test__extrema_bounding_invalid_compute_kwarg():
G = nx.path_graph(3)
with pytest.raises(ValueError, match="compute must be one of"):
_extrema_bounding(G, compute="spam")
class TestDistance:
def setup_method(self):
G = cnlti(nx.grid_2d_graph(4, 4), first_label=1, ordering="sorted")
self.G = G
def test_eccentricity(self):
assert nx.eccentricity(self.G, 1) == 6
e = nx.eccentricity(self.G)
assert e[1] == 6
sp = dict(nx.shortest_path_length(self.G))
e = nx.eccentricity(self.G, sp=sp)
assert e[1] == 6
e = nx.eccentricity(self.G, v=1)
assert e == 6
# This behavior changed in version 1.8 (ticket #739)
e = nx.eccentricity(self.G, v=[1, 1])
assert e[1] == 6
e = nx.eccentricity(self.G, v=[1, 2])
assert e[1] == 6
# test against graph with one node
G = nx.path_graph(1)
e = nx.eccentricity(G)
assert e[0] == 0
e = nx.eccentricity(G, v=0)
assert e == 0
pytest.raises(nx.NetworkXError, nx.eccentricity, G, 1)
# test against empty graph
G = nx.empty_graph()
e = nx.eccentricity(G)
assert e == {}
def test_diameter(self):
assert nx.diameter(self.G) == 6
def test_radius(self):
assert nx.radius(self.G) == 4
def test_periphery(self):
assert set(nx.periphery(self.G)) == {1, 4, 13, 16}
def test_center(self):
assert set(nx.center(self.G)) == {6, 7, 10, 11}
def test_bound_diameter(self):
assert nx.diameter(self.G, usebounds=True) == 6
def test_bound_radius(self):
assert nx.radius(self.G, usebounds=True) == 4
def test_bound_periphery(self):
result = {1, 4, 13, 16}
assert set(nx.periphery(self.G, usebounds=True)) == result
def test_bound_center(self):
result = {6, 7, 10, 11}
assert set(nx.center(self.G, usebounds=True)) == result
def test_radius_exception(self):
G = nx.Graph()
G.add_edge(1, 2)
G.add_edge(3, 4)
pytest.raises(nx.NetworkXError, nx.diameter, G)
def test_eccentricity_infinite(self):
with pytest.raises(nx.NetworkXError):
G = nx.Graph([(1, 2), (3, 4)])
e = nx.eccentricity(G)
def test_eccentricity_undirected_not_connected(self):
with pytest.raises(nx.NetworkXError):
G = nx.Graph([(1, 2), (3, 4)])
e = nx.eccentricity(G, sp=1)
def test_eccentricity_directed_weakly_connected(self):
with pytest.raises(nx.NetworkXError):
DG = nx.DiGraph([(1, 2), (1, 3)])
nx.eccentricity(DG)
class TestResistanceDistance:
@classmethod
def setup_class(cls):
global np
global sp
np = pytest.importorskip("numpy")
sp = pytest.importorskip("scipy")
def setup_method(self):
G = nx.Graph()
G.add_edge(1, 2, weight=2)
G.add_edge(2, 3, weight=4)
G.add_edge(3, 4, weight=1)
G.add_edge(1, 4, weight=3)
self.G = G
def test_resistance_distance(self):
rd = nx.resistance_distance(self.G, 1, 3, "weight", True)
test_data = 1 / (1 / (2 + 4) + 1 / (1 + 3))
assert round(rd, 5) == round(test_data, 5)
def test_resistance_distance_noinv(self):
rd = nx.resistance_distance(self.G, 1, 3, "weight", False)
test_data = 1 / (1 / (1 / 2 + 1 / 4) + 1 / (1 / 1 + 1 / 3))
assert round(rd, 5) == round(test_data, 5)
def test_resistance_distance_no_weight(self):
rd = nx.resistance_distance(self.G, 1, 3)
assert round(rd, 5) == 1
def test_resistance_distance_neg_weight(self):
self.G[2][3]["weight"] = -4
rd = nx.resistance_distance(self.G, 1, 3, "weight", True)
test_data = 1 / (1 / (2 + -4) + 1 / (1 + 3))
assert round(rd, 5) == round(test_data, 5)
def test_multigraph(self):
G = nx.MultiGraph()
G.add_edge(1, 2, weight=2)
G.add_edge(2, 3, weight=4)
G.add_edge(3, 4, weight=1)
G.add_edge(1, 4, weight=3)
rd = nx.resistance_distance(G, 1, 3, "weight", True)
assert np.isclose(rd, 1 / (1 / (2 + 4) + 1 / (1 + 3)))
def test_resistance_distance_div0(self):
with pytest.raises(ZeroDivisionError):
self.G[1][2]["weight"] = 0
nx.resistance_distance(self.G, 1, 3, "weight")
def test_resistance_distance_not_connected(self):
with pytest.raises(nx.NetworkXError):
self.G.add_node(5)
nx.resistance_distance(self.G, 1, 5)
def test_resistance_distance_same_node(self):
with pytest.raises(nx.NetworkXError):
nx.resistance_distance(self.G, 1, 1)
def test_resistance_distance_nodeA_not_in_graph(self):
with pytest.raises(nx.NetworkXError):
nx.resistance_distance(self.G, 9, 1)
def test_resistance_distance_nodeB_not_in_graph(self):
with pytest.raises(nx.NetworkXError):
nx.resistance_distance(self.G, 1, 9)
class TestBarycenter:
"""Test :func:`networkx.algorithms.distance_measures.barycenter`."""
def barycenter_as_subgraph(self, g, **kwargs):
"""Return the subgraph induced on the barycenter of g"""
b = nx.barycenter(g, **kwargs)
assert isinstance(b, list)
assert set(b) <= set(g)
return g.subgraph(b)
def test_must_be_connected(self):
pytest.raises(nx.NetworkXNoPath, nx.barycenter, nx.empty_graph(5))
def test_sp_kwarg(self):
# Complete graph K_5. Normally it works...
K_5 = nx.complete_graph(5)
sp = dict(nx.shortest_path_length(K_5))
assert nx.barycenter(K_5, sp=sp) == list(K_5)
# ...but not with the weight argument
for u, v, data in K_5.edges.data():
data["weight"] = 1
pytest.raises(ValueError, nx.barycenter, K_5, sp=sp, weight="weight")
# ...and a corrupted sp can make it seem like K_5 is disconnected
del sp[0][1]
pytest.raises(nx.NetworkXNoPath, nx.barycenter, K_5, sp=sp)
def test_trees(self):
"""The barycenter of a tree is a single vertex or an edge.
See [West01]_, p. 78.
"""
prng = Random(0xDEADBEEF)
for i in range(50):
RT = nx.random_tree(prng.randint(1, 75), prng)
b = self.barycenter_as_subgraph(RT)
if len(b) == 2:
assert b.size() == 1
else:
assert len(b) == 1
assert b.size() == 0
def test_this_one_specific_tree(self):
"""Test the tree pictured at the bottom of [West01]_, p. 78."""
g = nx.Graph(
{
"a": ["b"],
"b": ["a", "x"],
"x": ["b", "y"],
"y": ["x", "z"],
"z": ["y", 0, 1, 2, 3, 4],
0: ["z"],
1: ["z"],
2: ["z"],
3: ["z"],
4: ["z"],
}
)
b = self.barycenter_as_subgraph(g, attr="barycentricity")
assert list(b) == ["z"]
assert not b.edges
expected_barycentricity = {
0: 23,
1: 23,
2: 23,
3: 23,
4: 23,
"a": 35,
"b": 27,
"x": 21,
"y": 17,
"z": 15,
}
for node, barycentricity in expected_barycentricity.items():
assert g.nodes[node]["barycentricity"] == barycentricity
# Doubling weights should do nothing but double the barycentricities
for edge in g.edges:
g.edges[edge]["weight"] = 2
b = self.barycenter_as_subgraph(g, weight="weight", attr="barycentricity2")
assert list(b) == ["z"]
assert not b.edges
for node, barycentricity in expected_barycentricity.items():
assert g.nodes[node]["barycentricity2"] == barycentricity * 2